<ProNet>

Molecules defines all the bio-objects interactions and pathways in the pathogen molecule. Also includes the data sources of all the information

PathogenName (attributes)

PathogenName (a string) gives the name of the pathogen.

<CurationInfo>

Element 'CurationInfo' defines curation information

<Curators>

Curators (a string) is the curators who are responsible for the curation.

<Date>

Element 'Date' is a date

<Version>

Element 'Version' is the version number

<Note>

Element 'Note' is the comment made by the curator(s)

<Revision>

Element 'Revision' is a revision information

<ContactInfo>

Element 'contact-info' includes contact information

<Email>

Email is the email for answering related questions

<Telephone>

Element 'Telephone' includes telephone number for contact

<Address>

Element 'address' includes mailing address information

<BioObject>

BioObject defines the bio-objects (protein, protein complex, membrane protein, cell membrane, spore, ion, energy molecule, etc.) in the pathogen. Gives the name and type of the bio-objects

BioObjectID, ImageRefs, GI_Number, Accession_Number, Refs (attributes)

BioObjectID (a string) is a unique ID for for all bio-objects, interactions and pathways. ImageRefs (strings) is a reference to an ImageUnit that corresponds to this bio-object.

<Name>

Name (a string).

<Type>

Type (a string).

<Location>

Location (a string).

<Function>

Function (a string).

<Description>

Description (a string).

<Interaction>

Defines the interactions between bio-objects in the pathogen. Gives the type and description of the interaction.

GO_Evidence_Code, InteractionID, InputObjects, OutputObjects, Co-factors, Released-factors, Refs, ImageRefs (attributes)

InteractionID (a string) is a unique ID for for all bio-objects, interactions and pathways. Co-factors (strings) is a reference to the bio-objects that are co-factors in this interaction. InputObjects (strings) is a reference to the bio-objects that are inputs to this interaction. OutputObjects (strings) is a reference to the bio-objects that are outputs of this interaction. ImageRefs (strings) is a reference to an ImageUnit that corresponds to this interaction. GO_Evidence_Code uses GO evidence code to indicate the evidence level for the interaction

<Modifier>

Modifier defines the factors which afffect an interaction, hence affecting pathway(s).

ModifierID, InteractionRef, ObjectRefs, Refs (attributes)

ModifierID (a string) is a unique ID for each modifier. InteractionRef (a string) refers to the interaction where the modifier acts.

<Pathway>

Defines the pathways in the pathogen. Gives the name and description of the pathway.

PathwayID, StartBioObjectID, Datum, Refs, SubPathways, ImageRefs (attributes)

PathwayID (a string) is a unique ID for all bio-objects, interactions and pathways. Datum (strings) is a reference to the interactions that belong to this pathway. SubPathways (strings) is a reference to the pathways that are sub-pathways to this pathway. DataSourceRefs (strings) are references to a particular DataSource corresponding to this Taxon ImageRefs (strings) is a reference to an ImageUnit that corresponds to this pathway.

<DataSource>

DataSource defines the source from which factors involved in pathogenesis were obtained. This might be from journals, websites, books, databases, etc.

<JournalArticle>

JournalArticle defines the article from the journal from where the data is collected

RefID, PubMedID (attributes)

RefID (a string) is a unique ID for all Journal articles, books, databases, websites and curator inferences. PubmedID (a string) is a unique ID from Pubmed Online

<AuthorLine>

AuthorLine (a string) is a list of authors

<Title>

Title (a string) is the title of the article

<JournalTitle>

JournalTitle (a string) is the jornal name

<Volume>

Volume (a string) is the Volume of publication

<Issue>

Issue(a string) is the Issue of publication

<StartPage>

StartPage (a string) is the start page of published article

<EndPage>

EndPage (a string) is the end page of published article

<Book>

Book defines a book from where the data is collected

RefID, ISBN (attributes)

RefID (a string) is a unique ID for all Journal articles, books, databases, websites and curator inferences. ISBN is a unique ID provided by the book publisher

<ChapterTitle>

Title (a string) is the title of chapter article

<BookEditor>

BookEditor (a string) is the editor of the book.

<Pages>

Pages (a string) is number of pages of a published article.

<Publisher>

Ppublisher (a string) is the publisher of the book.

<Database>

Database define the database from where the data is collected

RefID (attributes)

RefID (a string) is a unique ID for all Journal articles, books, databases, websites and curator inferences.

<URL>

URL (a string) is the url of the website.

<section>

Section (a string)

<WebSite>

Website defines the data source(s) of all the data from a website. This includes information that is seen on a website, like the author, article title and the url of the site

RefID (attributes)

RefID (a string) is a unique ID for all Journal articles, books, databases, websites and curator inferences.

<CuratorInference>

CuratorInference defines inferences on a particular subject by the curator

RefID (attributes)

RefID (a string) is a unique ID for all Journal articles, books, databases, websites and curator inferences.

<ImageUnit>

Defines an Image that corresponds to a bio-object, interaction or a pathway in the pathogen. Gives the name, URL, an imagemap that identifies hotspots and a description of the image.

ImageID, Refs (attributes)

ImageID (a string) is a unique ID for all images DataSourceRefs (strings) are references to a particular DataSource corresponding to this Taxon

<ImageMap>

Defines the imagemap for an image. Defines all the hot-spots (clickable rectangular or circular regions)

<Rect>

Defines a rectangular region in the image that is clickable. The target is the unique ID of a bio-object, interaction or a pathway. Gives the x and y co-ordinates of the top left corner and the width and height of the rectangular region

<Target>

Defines the target of a particular hotspot (clikable region)

TargetID (attributes)

TargetID (string) is a unique ID of a bio-object, interaction or pathway

<Circle>

Defines a circular region in the image that is clickable. The target is the unique ID of a bio-object, interaction or a pathway. Gives the x and y co-ordinates of the center point and the radius of the circular region

<X>

X co-ordinate (int)

<Y>

Y co-ordinate (int)

<Height>

Height (int)

<Width>

Width (int)

<Radius>

Radius (int)