PathPort Publications
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A Generalized Framework for
Pathosystems Informatics & Bioinformatics Web Services.
The 2007 International Conference on Bioinformatics & Computational
Biology (BIOCOMP), June 2007, Las Vegas, NV, USA.
Tian Xue, Boyu Yang, Rebecca Will, Bruce Sharp, Ronald Kenyon, Oswald
Crasta, Bruno W. Sobral
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GeneTrees: a phylogenomics resource for prokaryotes.
Nucleic Acids Res. 2007 Jan; 35(Database issue):D328-31.
PMID: 17151073
Yuying Tian and Allan W. Dickerman.
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Loss in a bacterial group of a universal tRNA feature.
J. Bacteriol.,2007, In press.
Chunxia Wang, Bruno W. Sobral and Kelly P. Williams.
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Bioinformatics Web Services, The 2006 International Conference on
Bioinformatics & Computational Biology (BIOCOMP), June 2006, Las Vegas, NV, USA.
Boyu Yang, Tian Xue, Jing Zhao, Chaitanya Kommidi, Jeetendra Soneja, Jian Li,
Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta and Bruno W. S. Sobral.
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Genome Annotation and Comparison System, The
2006 International Conference on Bioinformatics & Computational Biology (BIOCOMP),
June 2006, Las Vegas, NV, USA.
*Jing Zhao, *Tian Xue, **Boyu Yang, Kelly Williams, Alice R. Wattam,
Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta and Bruno W. S. Sobral.
*Equal contribution, **presenter
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ToolBus - An Interoperable Environment for Biological
Researchers, 2005 International Conference on Mathematics and
Engineering Techniques in Medicine and Biological Sciences (METMBS
'05), June 2005, Las Vegas, NV, USA.
Boyu Yang, J Dana Eckart, Eric K. Nordberg and Bruno W. S. Sobral.
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YODA: Selecting Signature Oligonucleotides, Bioinformatics
(2004), Eric K. Nordberg.
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PIML: The Pathogen Information Markup Language,
Bioinformatics, Yongqun He, Richard R. Vines, Alice R. Wattam,
Georgiy V. Abramochkin, Allan W. Dickerman, J Dana Eckart,
Bruno W. S. Sobral. (accepted)
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Web Services as an Alternative to Software Porting,
2004 International Multiconference in Computer Science & Computer
Engineering, J Dana Eckart, June 2004, Las Vegas, Nevada.
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Software Development Without Requirements: Lightweight Tactical
Management, 8th World Multi-Conference on Systemics, Cybernetics
and Informatics, J Dana Eckart, July 2004, Orlando, FL.
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A Life Scientists Gateway to Distributed Data Management and
Computing: The PathPort/ToolBus Framework, OMICS: A Journal
of Integrative Biology, Volume 7, Number 1, pp 79-88,
J Dana Eckart and Bruno Sobral, Spring 2003.
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The Role of Bioinformatics in Toxicogenomics and Proteomics,
Proceedings from NATO Advanced Workshop on Toxicogenomics and
Proteomics, Prague, Czech Republic, October 16-20, 2002, Bruno Sobral,
J Dana Eckart, Reinhard Laubenbacher, and Pedro Mendes.
PathPort Presentations
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"Pathogen information collection, display and query based on an
eXtensible Markup Language" (poster), 104th ASM General Meeting,
New Orleans, LA, May 23-27, 2004,
Yongqun He, Richard Vines, Alice R. Wattam, Georgiy V. Abramochkin,
Allan W. Dickerman, J Dana Eckart, and Bruno W.S. Sobral.
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"PathPort: A Pathogen Portal Based on ToolBus"
(poster), Genome Informatics, Cold Spring Harbor, NY, 7-11 May 2003,
J Dana Eckart.
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"A Life Scientist's Road to Interoperability of Data and Tools",
Second Annual Data Visualization and Interpretation,
Cambridge HealthTech Institute,
September 24-25, 2003, Baltimore, Maryland, J Dana Eckart.
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"PathPort:
A Biologists Entrance to the Grid",
International Conference and Research Center for Computer Science,
Information and Process Integration: A Life Science Perspective,
Wadern, Germany, Jan 28-31, 2003, Stefan Hoops.
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"PathPort: A Pathogen Portal Based on ToolBus",
2002 Virginia Biotechnology Summit, McLean, VA, October 14-16, 2002,
J Dana Eckart.
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"A Simple, Modular, Scalable, and Open Software Architecture for
(Bio)Informatics'', Bioinformatics & Pharmacogenomics Symposium 2002,
Richmond, VA, June 12-14, 2002, J Dana Eckart.
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"A Simple, Modular, Scalable, and Open Software Architecture for
(Bio)Informatics", Bioinformatics Workshop I, College of William
and Mary, Williamsburg, VA, May 17-18, 2002, J Dana Eckart.
PathPort Training
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